#NEXUS [written Thu Mar 19 15:15:14 CET 2015 by Mesquite version 3.02 (build 681) at vivek-PC/147.94.124.197] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=36; TAXLABELS 'IMP-10' 'IMP-43' 'IMP-44' 'B-11' 'B-3' 'GOB-1' 'GOB-10' 'GOB-11' 'GOB-13' 'GOB-15' 'GOB-17' 'GOB-9' 'B-1' 'B-9' 'GOB-12' 'IMP-16' 'MUS-1' 'TUS-1' 'VIM-18' 'VIM-13' 'B-10' 'EBR-1' 'NDM-8' 'VIM-31' 'IMP-29' 'AIM-1' 'IND-5' 'IND-2a' 'IND-3' 'IND-4' 'VIM-7' 'VIM-38' 'NDM-4' 'VIM-12' 'DIM-1' 'VIM-27' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1; FORMAT DATATYPE = CONTINUOUS GAP = - MISSING = ?; CHARSTATELABELS 1 'F_Piperacillin' ; MATRIX 'IMP-10' 1.0 'IMP-43' 1.0 'IMP-44' 1.0 'B-11' 2.0 'B-3' 2.0 'GOB-1' 2.0 'GOB-10' 2.0 'GOB-11' 2.0 'GOB-13' 2.0 'GOB-15' 2.0 'GOB-17' 2.0 'GOB-9' 2.0 'B-1' 4.0 'B-9' 4.0 'GOB-12' 4.0 'IMP-16' 4.0 'MUS-1' 4.0 'TUS-1' 4.0 'VIM-18' 4.0 'VIM-13' 5.333333333 'B-10' 8.0 'EBR-1' 8.0 'NDM-8' 8.0 'VIM-31' 16.0 'IMP-29' 16.66666667 'AIM-1' 24.0 'IND-5' 32.0 'IND-2a' 64.0 'IND-3' 64.0 'IND-4' 64.0 'VIM-7' 64.0 'VIM-38' 128.0 'NDM-4' 256.0 'VIM-12' 256.0 'DIM-1' 512.0 'VIM-27' 512.0 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = Squared: 1; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = Brownian_default: 1; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE [0] 1 'IMP-10', [1] 2 'IMP-43', [2] 3 'IMP-44', [3] 4 'B-11', [4] 5 'B-3', [5] 6 'GOB-1', [6] 7 'GOB-10', [7] 8 'GOB-11', [8] 9 'GOB-13', [9] 10 'GOB-15', [10] 11 'GOB-17', [11] 12 'GOB-9', [12] 13 'B-1', [13] 14 'B-9', [14] 15 'GOB-12', [15] 16 'IMP-16', [16] 17 'MUS-1', [17] 18 'TUS-1', [18] 19 'VIM-18', [19] 20 'VIM-13', [20] 21 'B-10', [21] 22 'EBR-1', [22] 23 'NDM-8', [23] 24 'VIM-31', [24] 25 'IMP-29', [25] 26 'AIM-1', [26] 27 'IND-5', [27] 28 'IND-2a', [28] 29 'IND-3', [29] 30 'IND-4', [30] 31 'VIM-7', [31] 32 'VIM-38', [32] 33 'NDM-4', [33] 34 'VIM-12', [34] 35 'DIM-1', [35] 36 'VIM-27'; TREE Imported_tree_1 = ((((((((19,24)0.9800,34)0.8000,(20,(36,32)0.4100)0.4000)0.8700,31)1.0000,(33,23)1.0000)0.8900,(35,(1,(2,(25,(16,3)0.4600)0.5200)0.5500)1.0000)0.6200)0.9700,((17,18)0.9900,((((21,14)0.9900,5)0.8000,(13,4)0.9500)1.0000,(22,(30,(28,(29,27)0.9700)0.8000)0.9800)0.9700)0.5600)0.6200)1.0000,(26,(11,(((9,10)0.9700,8)0.6600,(15,(6,(7,12)0.9800)0.3700)0.5900)0.5600)0.7300)1.0000); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1426774514208; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6596977996152887883; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2352123723808911503; mqVersion 302; checksumv 0 3 2313966137 null numChars 1 numItems 1 min 1.0 max 512.0 sumSquares 690633.2222223298 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 194; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 942; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6596977996152887883 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 3641.1423155974577.2167668450452892205; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1486 870; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines off; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; newAssistant #mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory; tell It; suspend ; setDisplayMode #mesquite.ancstates.ShadeStatesOnTree.ShadeStatesOnTree; tell It; toggleLabels off; togglePredictions off; toggleGray off; endTell; setHistorySource #mesquite.ancstates.RecAncestralStates.RecAncestralStates; tell It; getCharacterSource #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed; tell It; setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters; tell It; setDataSet #2352123723808911503; endTell; endTell; setMethod #mesquite.parsimony.ParsAncestralStates.ParsAncestralStates; tell It; setModelSource #mesquite.parsimony.CurrentParsModels.CurrentParsModels; toggleMPRsMode off; getEmployee #mesquite.parsimony.ParsimonySquared.ParsimonySquared; tell It; toggleWeight on; endTell; endTell; toggleShowSelectedOnly off; endTell; setCharacter 1; setNumBins 3; setBins 3.99 32; setMapping 1; toggleShowLegend on; setColorMode 0; toggleWeights on; setInitialOffsetX 849; setInitialOffsetY 110; setLegendWidth 141; setLegendHeight 180; resume ; modifyColors 2 0 55 255 5 2 1 255 248 71 2 2 10 20 255; endTell; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;