#NEXUS [written Thu Mar 19 12:28:55 CET 2015 by Mesquite version 3.02 (build 681) at vivek-PC/147.94.124.197] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=21; TAXLABELS 'GOB-15' 'B-1' 'B-10' 'GOB-11' 'GOB-13' 'MUS-1' 'B-11' 'B-12' 'B-13' 'B-9' 'GOB-10' 'GOB-12' 'GOB-17' 'GOB-9' 'TUS-1' 'GOB-8' 'EBR-1' 'GOB-1' 'NDM-8' 'IMP-43' 'IMP-44' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1; FORMAT DATATYPE = CONTINUOUS GAP = - MISSING = ?; CHARSTATELABELS 1 'F_Moxalactam' ; MATRIX 'GOB-15' 0.5 'B-1' 1.0 'B-10' 1.0 'GOB-11' 1.0 'GOB-13' 1.0 'MUS-1' 1.0 'B-11' 2.083333333 'B-12' 2.083333333 'B-13' 2.083333333 'B-9' 2.083333333 'GOB-10' 2.083333333 'GOB-12' 2.083333333 'GOB-17' 2.083333333 'GOB-9' 2.083333333 'TUS-1' 2.083333333 'GOB-8' 4.166666667 'EBR-1' 8.333333333 'GOB-1' 8.333333333 'NDM-8' 64.0 'IMP-43' 1024.0 'IMP-44' 2048.0 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = Squared: 1; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = Brownian_default: 1; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE [0] 1 'GOB-15', [1] 2 'B-1', [2] 3 'B-10', [3] 4 'GOB-11', [4] 5 'GOB-13', [5] 6 'MUS-1', [6] 7 'B-11', [7] 8 'B-12', [8] 9 'B-13', [9] 10 'B-9', [10] 11 'GOB-10', [11] 12 'GOB-12', [12] 13 'GOB-17', [13] 14 'GOB-9', [14] 15 'TUS-1', [15] 16 'GOB-8', [16] 17 'EBR-1', [17] 18 'GOB-1', [18] 19 'NDM-8', [19] 20 'IMP-43', [20] 21 'IMP-44'; TREE Imported_tree_1 = (((((((2,7)1.0000,(3,10)0.9100)0.3900,(8,9)0.9600)0.9900,17)0.7500,(6,15)0.9600)0.6600,(19,(20,21)0.9600)0.9100)1.0000,(13,((5,1)1.0000,(4,(12,(18,(14,(11,16)0.7500)1.0000)0.5600)0.8000)0.5000)0.5300)1.0000); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1426764535702; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4834574381803824926; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5581592087700814959; mqVersion 302; checksumv 0 3 4022444692 null numChars 1 numItems 1 min 0.5 max 2048.0 sumSquares 5247176.5624999795 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 194; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 942; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4834574381803824926 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 3498.1423155877768.2060812688596838029; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1486 870; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines off; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; newAssistant #mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory; tell It; suspend ; setDisplayMode #mesquite.ancstates.ShadeStatesOnTree.ShadeStatesOnTree; tell It; toggleLabels off; togglePredictions off; toggleGray off; endTell; setHistorySource #mesquite.ancstates.RecAncestralStates.RecAncestralStates; tell It; getCharacterSource #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed; tell It; setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters; tell It; setDataSet #5581592087700814959; endTell; endTell; setMethod #mesquite.parsimony.ParsAncestralStates.ParsAncestralStates; tell It; setModelSource #mesquite.parsimony.CurrentParsModels.CurrentParsModels; toggleMPRsMode off; getEmployee #mesquite.parsimony.ParsimonySquared.ParsimonySquared; tell It; toggleWeight on; endTell; endTell; toggleShowSelectedOnly off; endTell; setCharacter 1; setNumBins 3; setBins 3.99 50; setMapping 1; toggleShowLegend on; setColorMode 0; toggleWeights on; setInitialOffsetX 895; setInitialOffsetY 124; setLegendWidth 142; setLegendHeight 180; resume ; modifyColors 2 0 55 255 5 2 1 255 248 71 2 2 10 20 255; endTell; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;