#NEXUS [written Fri Jun 26 16:44:43 CEST 2015 by Mesquite version 3.02 (build 681) at vivek-PC/147.94.124.197] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=42; TAXLABELS 'VEB-1' 'GES-2' 'CTX-M-93' 'TEM-28' 'SHV-16' 'TEM-43' 'RAHN-2' 'PER-6' 'TEM-30' 'CTX-M-27' 'RAHN-1' 'GES-13' 'AST-1' 'Lut-1' 'TEM-187' 'CTX-M-16' 'SHV-7' 'CTX-M-53' 'TEM-67' 'CTX-M-8' 'GES-3' 'BES-1' 'TEM-42' 'BEL-2' 'BIC-1' 'CARB-10' 'TEM-52' 'TEM-59' 'ERP-1' 'CTX-M-25' 'CTX-M-19' 'CTX-M-18' 'SME-1' 'IBC-2' 'GES-9' 'TEM-121' 'TEM-151' 'TEM-158' 'SHV-49' 'TEM-125' 'TEM-80' 'TEM-152' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1; FORMAT DATATYPE = CONTINUOUS GAP = - MISSING = ?; CHARSTATELABELS 1 'F_Ticarcillin-CLA' ; MATRIX 'VEB-1' 0.25 'GES-2' 1.0 'CTX-M-93' 1.0 'TEM-28' 2.0 'SHV-16' 2.0 'TEM-43' 2.0 'RAHN-2' 3.0 'PER-6' 3.0 'TEM-30' 4.0 'CTX-M-27' 4.0 'RAHN-1' 8.0 'GES-13' 8.0 'AST-1' 8.0 'Lut-1' 8.0 'TEM-187' 8.0 'CTX-M-16' 8.0 'SHV-7' 8.0 'CTX-M-53' 16.0 'TEM-67' 16.0 'CTX-M-8' 16.0 'GES-3' 16.0 'BES-1' 16.0 'TEM-42' 16.0 'BEL-2' 16.0 'BIC-1' 32.0 'CARB-10' 32.0 'TEM-52' 32.0 'TEM-59' 32.0 'ERP-1' 64.0 'CTX-M-25' 64.0 'CTX-M-19' 128.0 'CTX-M-18' 128.0 'SME-1' 128.0 'IBC-2' 128.0 'GES-9' 128.0 'TEM-121' 256.0 'TEM-151' 256.0 'TEM-158' 256.0 'SHV-49' 256.0 'TEM-125' 512.0 'TEM-80' 512.0 'TEM-152' 1024.0 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = Squared: 1; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = Brownian_default: 1; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE [0] 1 'VEB-1', [1] 2 'GES-2', [2] 3 'CTX-M-93', [3] 4 'TEM-28', [4] 5 'SHV-16', [5] 6 'TEM-43', [6] 7 'RAHN-2', [7] 8 'PER-6', [8] 9 'TEM-30', [9] 10 'CTX-M-27', [10] 11 'RAHN-1', [11] 12 'GES-13', [12] 13 'AST-1', [13] 14 'Lut-1', [14] 15 'TEM-187', [15] 16 'CTX-M-16', [16] 17 'SHV-7', [17] 18 'CTX-M-53', [18] 19 'TEM-67', [19] 20 'CTX-M-8', [20] 21 'GES-3', [21] 22 'BES-1', [22] 23 'TEM-42', [23] 24 'BEL-2', [24] 25 'BIC-1', [25] 26 'CARB-10', [26] 27 'TEM-52', [27] 28 'TEM-59', [28] 29 'ERP-1', [29] 30 'CTX-M-25', [30] 31 'CTX-M-19', [31] 32 'CTX-M-18', [32] 33 'SME-1', [33] 34 'IBC-2', [34] 35 'GES-9', [35] 36 'TEM-121', [36] 37 'TEM-151', [37] 38 'TEM-158', [38] 39 'SHV-49', [39] 40 'TEM-125', [40] 41 'TEM-80', [41] 42 'TEM-152'; TREE Imported_tree_1 = (((((((((((40,38)0.6600,41)0.6600,(37,42)0.6600)0.4600,(15,4)0.2400)0.1400,((36,23)0.2400,(9,(28,19)0.4600)0.2400)0.2400)0.5500,(6,27)0.5300)1.0000,(17,(5,39)0.7700)1.0000)1.0000,26)0.9900,(13,((25,33)1.0000,(14,((22,29)0.5300,((11,7)1.0000,(18,((30,20)0.8100,((32,31)0.6200,(16,(10,3)0.4600)0.4800)0.9900)0.7400)0.9200)1.0000)0.7800)0.7600)0.8100)0.8700)0.9000,(24,(12,(2,(21,(35,34)0.4700)0.5000)0.3100)1.0000)0.9900)1.0000,(8,1)1.0000); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1435329883877; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7991927165682313626; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7387994759792437742; mqVersion 302; checksumv 0 3 868761984 null numChars 1 numItems 1 min 0.25 max 1024.0 sumSquares 1931520.0625 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 194; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 942; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7991927165682313626 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 5241.1423063355732.4670848594324281109; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1486 870; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines off; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; newAssistant #mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory; tell It; suspend ; setDisplayMode #mesquite.ancstates.ShadeStatesOnTree.ShadeStatesOnTree; tell It; toggleLabels off; togglePredictions off; toggleGray off; endTell; setHistorySource #mesquite.ancstates.RecAncestralStates.RecAncestralStates; tell It; getCharacterSource #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed; tell It; setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters; tell It; setDataSet #7387994759792437742; endTell; endTell; setMethod #mesquite.parsimony.ParsAncestralStates.ParsAncestralStates; tell It; setModelSource #mesquite.parsimony.CurrentParsModels.CurrentParsModels; toggleMPRsMode off; getEmployee #mesquite.parsimony.ParsimonySquared.ParsimonySquared; tell It; toggleWeight on; endTell; endTell; toggleShowSelectedOnly off; endTell; setCharacter 1; setNumBins 3; setBins 3.99 128; setMapping 1; toggleShowLegend on; setColorMode 0; toggleWeights on; setInitialOffsetX 953; setInitialOffsetY 38; setLegendWidth 158; setLegendHeight 180; resume ; modifyColors 2 0 34 255 15 2 1 255 246 41 2 2 10 20 255; endTell; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;